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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspg4Chondroitin sulfate proteoglycan 4. (2310 aa)    
Predicted Functional Partners:
W5KVG0_ASTMX
Glutamate receptor interacting protein 1.
    
 
 0.577
Bcan
Brevican.
     
 0.523
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.516
ENSAMXP00000042222
Heparan sulfate proteoglycan 2.
   
 
0.459
W5LCK6_ASTMX
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
   
 
 0.455
chst7
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.444
Agrn
Agrin.
   
 
0.441
csgalnact2
Hexosyltransferase.
     
 0.437
LOC103042895
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.434
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.432
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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