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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulk1Unc-51 like autophagy activating kinase 1. (1021 aa)    
Predicted Functional Partners:
Becn1
Beclin 1, autophagy related.
    
 0.996
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.996
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.993
atg101
Autophagy related 101.
    
 0.992
atg2a
Autophagy related 2A.
   
 0.980
ambra1
Autophagy/beclin-1 regulator 1b.
   
 0.966
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 0.960
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.960
fundc1
FUN14 domain containing 1.
    
 0.958
FUNDC1
FUN14 domain containing 1.
    
 0.958
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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