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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103022692RRM domain-containing protein. (454 aa)    
Predicted Functional Partners:
LOC103027270
Serine and arginine rich splicing factor 2a.
   
0.812
Srrm1
PWI domain-containing protein.
   
 0.762
pnisr
Uncharacterized protein.
   
 
 0.739
LOC103033517
Serine and arginine rich splicing factor 9.
   
 0.730
LOC103045376
Serine and arginine rich splicing factor 3a.
   
 0.717
srsf3
Serine and arginine rich splicing factor 3.
   
 0.717
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.708
Pabpn1
Poly(A) binding protein, nuclear 1.
   
 0.692
Ncmap
Si:dkey-221l4.10.
   
 0.684
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
 0.674
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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