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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KMZ7_ASTMXRyanodine receptor 1a (skeletal). (4937 aa)    
Predicted Functional Partners:
LOC103040235
Peptidylprolyl isomerase.
    
 0.712
LOC103030299
Peptidylprolyl isomerase.
    
 0.709
fkbp1b
Peptidylprolyl isomerase.
    
 0.709
Fkbp3
Peptidylprolyl isomerase.
    
 0.668
LOC103045170
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
   
 
 0.631
STAC3
SH3 and cysteine rich domain 3.
   
  
 0.585
W5KUT1_ASTMX
Selenoprotein N.
    
 
 0.568
Mtm1
Myotubularin 1.
      
 0.563
ENSAMXP00000033671
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.543
ENSAMXP00000033983
Calmodulin 3b (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 
 0.543
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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