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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103041448Importin subunit alpha; Belongs to the importin alpha family. (520 aa)    
Predicted Functional Partners:
kpnb1
Karyopherin (importin) beta 1.
   
 0.907
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.783
ranbp1
RAN binding protein 1.
   
 
 0.755
cse1l
CSE1 chromosome segregation 1-like (yeast).
   
 
 0.739
ENSAMXP00000033034
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.737
dlgap5
Discs, large (Drosophila) homolog-associated protein 5.
   
  
 0.698
ENSAMXP00000037182
Regulator of chromosome condensation 1.
   
 
 0.698
LOC103027697
FH2 domain containing 3.
   
 
 0.697
nup153
Nucleoporin 153.
   
 
 0.674
nup50
Nucleoporin 50.
   
 
 0.666
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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