close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KNK0_ASTMXPhotolyase/cryptochrome alpha/beta domain-containing protein. (546 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
    
 0.809
per3
Period circadian clock 3.
   
 0.796
LOC103039742
Period circadian clock 2.
   
 0.775
LOC103027542
Period circadian clock 1a.
   
 0.757
Clock
Clock circadian regulator a.
   
 0.754
LOC103033595
Period circadian clock 1b.
   
 0.746
W5KHP9_ASTMX
Neuronal PAS domain protein 2.
   
 0.697
arntl2
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.663
LOC103027946
PAS domain-containing protein.
   
 0.649
Sirt1
Deacetylase sirtuin-type domain-containing protein.
  
  
 0.617
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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