LOC103039881 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103039881

Chemokine (C-C motif) ligand 35, duplicate 2. (100 aa)

Predicted Functional Partners:

irf5

0.945

ENSAMXP00000033181

0.884

LOC103028160

0.884

ENSAMXP00000044797

0.874

ENSAMXP00000048688

0.843

LOC103021920

0.838

W5KDK8_ASTMX

0.803

ENSAMXP00000051475

0.803

ENSAMXP00000051384

0.736

cxcr5

0.684

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000033181	ENSAMXP00000044797	ENSAMXP00000033181	ENSAMXP00000044797	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	SCY domain-containing protein.	0.638
ENSAMXP00000033181	ENSAMXP00000051384	ENSAMXP00000033181	ENSAMXP00000051384	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.439
ENSAMXP00000033181	ENSAMXP00000051475	ENSAMXP00000033181	ENSAMXP00000051475	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.521
ENSAMXP00000033181	LOC103039881	ENSAMXP00000033181	ENSAMXP00000009248	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) ligand 35, duplicate 2.	0.884
ENSAMXP00000033181	W5KDK8_ASTMX	ENSAMXP00000033181	ENSAMXP00000005669	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.521
ENSAMXP00000044797	ENSAMXP00000033181	ENSAMXP00000044797	ENSAMXP00000033181	SCY domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.638
ENSAMXP00000044797	ENSAMXP00000048688	ENSAMXP00000044797	ENSAMXP00000048688	SCY domain-containing protein.	Interferon regulatory factor 6.	0.831
ENSAMXP00000044797	LOC103028160	ENSAMXP00000044797	ENSAMXP00000042686	SCY domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.638
ENSAMXP00000044797	LOC103039881	ENSAMXP00000044797	ENSAMXP00000009248	SCY domain-containing protein.	Chemokine (C-C motif) ligand 35, duplicate 2.	0.874
ENSAMXP00000044797	cxcr5	ENSAMXP00000044797	ENSAMXP00000043055	SCY domain-containing protein.	Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.	0.590
ENSAMXP00000044797	irf5	ENSAMXP00000044797	ENSAMXP00000016712	SCY domain-containing protein.	Interferon regulatory factor 5.	0.901
ENSAMXP00000048688	ENSAMXP00000044797	ENSAMXP00000048688	ENSAMXP00000044797	Interferon regulatory factor 6.	SCY domain-containing protein.	0.831
ENSAMXP00000048688	ENSAMXP00000051475	ENSAMXP00000048688	ENSAMXP00000051475	Interferon regulatory factor 6.	C-C motif chemokine.	0.622
ENSAMXP00000048688	LOC103039881	ENSAMXP00000048688	ENSAMXP00000009248	Interferon regulatory factor 6.	Chemokine (C-C motif) ligand 35, duplicate 2.	0.843
ENSAMXP00000048688	W5KDK8_ASTMX	ENSAMXP00000048688	ENSAMXP00000005669	Interferon regulatory factor 6.	C-C motif chemokine.	0.622
ENSAMXP00000051384	ENSAMXP00000033181	ENSAMXP00000051384	ENSAMXP00000033181	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.439
ENSAMXP00000051384	LOC103028160	ENSAMXP00000051384	ENSAMXP00000042686	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.439
ENSAMXP00000051384	LOC103039881	ENSAMXP00000051384	ENSAMXP00000009248	C-C motif chemokine.	Chemokine (C-C motif) ligand 35, duplicate 2.	0.736
ENSAMXP00000051384	cxcr5	ENSAMXP00000051384	ENSAMXP00000043055	C-C motif chemokine.	Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.	0.669
ENSAMXP00000051475	ENSAMXP00000033181	ENSAMXP00000051475	ENSAMXP00000033181	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.521