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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103022868RAP1A, member of RAS oncogene family b. (185 aa)    
Predicted Functional Partners:
Braf
B-Raf proto-oncogene, serine/threonine kinase.
   
 0.975
W5JZM9_ASTMX
Uncharacterized protein.
    
 0.948
LOC103034138
Mitogen-activated protein kinase.
   
 0.927
LOC103040580
Mitogen-activated protein kinase.
   
 0.927
LOC103035319
Mitogen-activated protein kinase.
   
 0.927
LOC103034112
Protein kinase, cAMP-dependent, catalytic, beta b; Belongs to the protein kinase superfamily.
   
 0.923
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.923
LOC103024963
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
   
 0.923
LOC103023241
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.
   
 0.923
rap1b
RAP1B, member of RAS oncogene family.
  
  
 
0.900
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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