W5KP69_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5KP69_ASTMX

Protein tyrosine phosphatase receptor type K. (1395 aa)

Predicted Functional Partners:

LOC103038497

0.547

PTK7

0.533

ENSAMXP00000041588

0.533

Ror1

0.527

ror2

0.527

LOC103030218

0.469

LOC103045248

0.469

ENSAMXP00000047988

0.469

LOC103036564

0.469

W5K3K3_ASTMX

0.467

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000041588	ENSAMXP00000047988	ENSAMXP00000041588	ENSAMXP00000047988	Protein kinase domain-containing protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	0.744
ENSAMXP00000041588	LOC103030218	ENSAMXP00000041588	ENSAMXP00000031114	Protein kinase domain-containing protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.744
ENSAMXP00000041588	LOC103036564	ENSAMXP00000041588	ENSAMXP00000052723	Protein kinase domain-containing protein.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.744
ENSAMXP00000041588	LOC103045248	ENSAMXP00000041588	ENSAMXP00000036124	Protein kinase domain-containing protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.744
ENSAMXP00000041588	W5K3K3_ASTMX	ENSAMXP00000041588	ENSAMXP00000002164	Protein kinase domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.672
ENSAMXP00000041588	W5KP69_ASTMX	ENSAMXP00000041588	ENSAMXP00000009381	Protein kinase domain-containing protein.	Protein tyrosine phosphatase receptor type K.	0.533
ENSAMXP00000047988	ENSAMXP00000041588	ENSAMXP00000047988	ENSAMXP00000041588	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Protein kinase domain-containing protein.	0.744
ENSAMXP00000047988	LOC103030218	ENSAMXP00000047988	ENSAMXP00000031114	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.450
ENSAMXP00000047988	LOC103036564	ENSAMXP00000047988	ENSAMXP00000052723	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.446
ENSAMXP00000047988	LOC103045248	ENSAMXP00000047988	ENSAMXP00000036124	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.433
ENSAMXP00000047988	PTK7	ENSAMXP00000047988	ENSAMXP00000032722	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.744
ENSAMXP00000047988	W5K3K3_ASTMX	ENSAMXP00000047988	ENSAMXP00000002164	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	MET proto-oncogene, receptor tyrosine kinase.	0.672
ENSAMXP00000047988	W5KP69_ASTMX	ENSAMXP00000047988	ENSAMXP00000009381	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Protein tyrosine phosphatase receptor type K.	0.469
LOC103030218	ENSAMXP00000041588	ENSAMXP00000031114	ENSAMXP00000041588	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Protein kinase domain-containing protein.	0.744
LOC103030218	ENSAMXP00000047988	ENSAMXP00000031114	ENSAMXP00000047988	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	0.450
LOC103030218	LOC103036564	ENSAMXP00000031114	ENSAMXP00000052723	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.506
LOC103030218	PTK7	ENSAMXP00000031114	ENSAMXP00000032722	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.744
LOC103030218	W5K3K3_ASTMX	ENSAMXP00000031114	ENSAMXP00000002164	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	MET proto-oncogene, receptor tyrosine kinase.	0.672
LOC103030218	W5KP69_ASTMX	ENSAMXP00000031114	ENSAMXP00000009381	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Protein tyrosine phosphatase receptor type K.	0.469
LOC103036564	ENSAMXP00000041588	ENSAMXP00000052723	ENSAMXP00000041588	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Protein kinase domain-containing protein.	0.744