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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmf1TATA element modulatory factor 1. (1161 aa)    
Predicted Functional Partners:
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.771
Gcc2
GRIP domain-containing protein.
   
 0.720
vps54
VPS54 subunit of GARP complex.
   
 
 0.718
Cog8
Component of oligomeric golgi complex 8.
     
 0.716
Vps51
VPS51 subunit of GARP complex.
     
 0.709
Cog7
Component of oligomeric golgi complex 7.
     
 0.698
vps53
VPS53 subunit of GARP complex.
     
 0.697
cog1
Component of oligomeric golgi complex 1.
     
 0.695
COG5
Component of oligomeric golgi complex 5.
     
 0.692
ENSAMXP00000048995
Uncharacterized protein.
     
 0.689
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.