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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103033421Spectrin beta chain; Belongs to the spectrin family. (2358 aa)    
Predicted Functional Partners:
sptan1
Spectrin alpha, non-erythrocytic 1.
   
0.863
W5KJM9_ASTMX
Uncharacterized protein.
     
 0.581
ENSAMXP00000031362
Uncharacterized protein.
     
 0.581
ENSAMXP00000037400
Uncharacterized protein.
     
 0.581
ENSAMXP00000041639
SH3 domain-containing protein.
     
 0.581
ENSAMXP00000045117
EH domain-containing protein.
     
 0.581
ENSAMXP00000052579
Uncharacterized protein.
     
 0.581
copb1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.464
LOC103027150
CARD- and ANK-containing Inflammasome Adaptor Protein.
   
 0.455
Ank3
Ankyrin 3b.
   
 0.455
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.