Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cfap221Si:ch73-222h13.1. (778 aa)    
Predicted Functional Partners:
ENSAMXP00000046158
Si:dkey-208b23.5.
   
 
 0.711
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.645
ENSAMXP00000031471
PIH1 domain containing 3.
   
  
 0.642
ZNF830
Zinc finger protein 830.
      
 0.603
cfap74
Calcium channel, voltage-dependent, L type, alpha 1D subunit, b.
   
 
 0.591
ttc26
Tetratricopeptide repeat domain 26.
      
 0.583
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.554
ENSAMXP00000034632
Uncharacterized protein.
    
 
 0.547
c1d
C1D nuclear receptor corepressor.
      
 0.538
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.534
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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