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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103040794Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a. (1810 aa)    
Predicted Functional Partners:
W5L9Q1_ASTMX
Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.
   
0.817
ENSAMXP00000046873
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
0.817
W5L1R1_ASTMX
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.811
Cask
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
   
 0.811
ENSAMXP00000031128
LITAF domain-containing protein.
   
 0.751
GRIN3A
Glutamate ionotropic receptor NMDA type subunit 3A.
    
0.610
W5K947_ASTMX
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2.
   
 0.545
LOC103043420
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1.
   
 0.545
ENSAMXP00000036874
Protein kinase domain-containing protein.
   
 0.545
LOC103033831
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2; Belongs to the protein kinase superfamily.
   
 0.545
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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