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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KQ72_ASTMXUncharacterized protein; Belongs to the serpin family. (786 aa)    
Predicted Functional Partners:
f2
Coagulation factor II (thrombin); Belongs to the peptidase S1 family.
  
 0.621
serpinc1
Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.
  
0.535
LOC103043894
Vitronectin a.
   
 0.517
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
  
 
0.493
fgb
Fibrinogen beta chain.
   
 0.493
vtn
Vitronectin b.
   
 0.492
proc
Uncharacterized protein; Belongs to the peptidase S1 family.
  
  0.490
fgg
Fibrinogen gamma chain.
   
 0.401
sec24d
SEC24 homolog D, COPII coat complex component.
   
 
 0.400
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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