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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pgbd5PiggyBac transposable element derived 5. (409 aa)    
Predicted Functional Partners:
ENSAMXP00000035815
Si:ch73-130a3.4.
    
 
 0.680
LOC111192370
Ig_4 domain-containing protein.
   
 0.674
ENSAMXP00000051399
Ig_4 domain-containing protein.
   
 0.674
CD247
CD247 molecule.
   
 0.608
zmym2
Zinc finger, MYM-type 2.
    
 
 0.604
samd11
Sterile alpha motif domain containing 11.
    
 
 0.597
LOC103031955
SET domain and mariner transposase fusion gene.
    
 
 0.591
W5K3J0_ASTMX
RNA binding motif protein 33a.
   
 
 0.585
W5L7F1_ASTMX
Transmembrane protein 145.
   
  
 0.537
eed
Embryonic ectoderm development.
    
 
 0.535
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.