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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Myo10Myosin X; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2039 aa)    
Predicted Functional Partners:
Ush1c
Usher syndrome 1C.
   
 0.615
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.544
LOC103036832
Usher syndrome 1Gb (autosomal recessive).
   
 0.544
ush1g
Usher syndrome 1Ga (autosomal recessive).
   
 0.544
whrn
Whirlin a.
    
 0.505
ENSAMXP00000042967
PDZ domain-containing protein.
    
 0.505
ENSAMXP00000048108
PDZ domain-containing protein.
    
 0.505
LOC111193896
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
     
 0.423
LOC103031419
Neogenin 1a.
    
  0.411
Dcc
DCC netrin 1 receptor.
    
  0.411
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.