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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107197663Ion_trans domain-containing protein. (616 aa)    
Predicted Functional Partners:
catsper2
Ion_trans domain-containing protein.
  
0.982
catsper3
Ion_trans domain-containing protein.
  
0.958
catsper4
Ion_trans domain-containing protein.
  
 
0.830
ENSAMXP00000054595
Ion_trans domain-containing protein.
  
 
0.811
ENSAMXP00000051953
Ion_trans domain-containing protein.
  
 
0.806
W5LLA1_ASTMX
Calcium voltage-gated channel subunit alpha1 Ib.
    
0.786
ENSAMXP00000033806
Calcium channel, voltage-dependent, T type, alpha 1H subunit a.
    
0.786
ENSAMXP00000052572
Ion_trans domain-containing protein.
  
 
0.733
W5LRS4_ASTMX
Transmembrane protein 238a.
    
 0.727
TMEM238
Transmembrane protein 238.
    
 0.727
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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