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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KQK2_ASTMXPalladin, cytoskeletal associated protein. (855 aa)    
Predicted Functional Partners:
ENSAMXP00000040874
Ig-like domain-containing protein.
 
     0.919
wdr18
WD repeat domain 18.
   
 0.633
tex10
Testis expressed 10.
   
 0.584
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.557
W5LM42_ASTMX
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 0.424
actn4
Actinin, alpha 4.
   
 0.418
LOC103022703
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.418
nol9
Nucleolar protein 9.
   
 0.414
LOC111194481
Vimentin like; Belongs to the intermediate filament family.
   
  0.410
LOC103043375
Titin-cap (telethonin).
   
 0.403
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.