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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
romo1Reactive oxygen species modulator 1. (79 aa)    
Predicted Functional Partners:
LOC103041801
Ubiquinol-cytochrome c reductase, complex III subunit X.
   
  
 0.809
pam16
Presequence translocase associated motor 16.
   
  
 0.776
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
   0.776
LOC103035169
Ubiquinol-cytochrome c reductase, complex III subunit VII.
   
  
 0.769
timm21
Translocase of inner mitochondrial membrane 21.
    
 
 0.765
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
  
 0.748
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
  
 0.738
TOMM7
Translocase of outer mitochondrial membrane 7.
   
  
 0.738
ndufb11
NADH:ubiquinone oxidoreductase subunit B11.
   
    0.729
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
   
  
 0.727
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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