Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103029774Si:dkey-88l16.3. (3131 aa)    
Predicted Functional Partners:
Ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.910
lrpap1
Low density lipoprotein receptor-related protein associated protein 1.
    
 0.880
MUSK
Muscle associated receptor tyrosine kinase.
   
 0.858
Agrn
Agrin.
    
 0.788
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.726
dab1
DAB adaptor protein 1a.
    
 0.692
Wnt1
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.692
LOC103030188
DAB adaptor protein 2.
    
 0.689
LOC103024390
Si:ch211-204c21.1.
    
 0.689
ENSAMXP00000032422
Low density lipoprotein receptor adaptor protein 1a.
    
 0.675
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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