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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103028570Scavenger receptor class B, member 2c; Belongs to the CD36 family. (478 aa)    
Predicted Functional Partners:
LOC103034805
Uncharacterized protein; Belongs to the CD36 family.
  
  
 
0.908
LOC103046960
Scavenger receptor class B, member 2a; Belongs to the CD36 family.
  
  
 
0.902
apob
Apolipoprotein Ba.
    
 0.673
LOC103031260
Apolipoprotein Bb, tandem duplicate 2.
    
 0.673
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.636
LOC103039990
TIR domain-containing protein.
   
 0.573
ENSAMXP00000043438
TIR domain-containing protein.
   
 0.573
LOC111195965
TIR domain-containing protein.
   
 0.573
ENSAMXP00000035084
Uncharacterized protein.
    
 0.571
ENSAMXP00000035399
Uncharacterized protein.
    
 0.571
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.