Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5KRS3_ASTMXUncharacterized protein. (2239 aa)    
Predicted Functional Partners:
tex11
Testis expressed 11.
      
 0.767
LOC103033426
PR domain containing 9.
    
 0.727
ENSAMXP00000041468
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1.
      
 0.713
LOC103032451
Transcription activation suppressor b.
     
 0.704
Fam208a
Uncharacterized protein.
     
 0.704
W5LMG1_ASTMX
Uncharacterized protein.
      
 0.661
ENSAMXP00000034122
Si:dkey-40g16.5.
     
 0.646
LOC103037541
Ubiquitin like 4A.
     
 0.640
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.627
faap24
FA core complex associated protein 24.
    
 
 0.610
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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