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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc151Coiled-coil domain containing 151. (554 aa)    
Predicted Functional Partners:
LOC103028563
Coiled-coil domain containing 114.
  
 0.910
W5KDL5_ASTMX
Armadillo repeat containing 4.
    
 
 0.871
Ttc25
Tetratricopeptide repeat domain 25.
   
 0.770
ENSAMXP00000051020
TPR_REGION domain-containing protein.
   
 0.770
efcab1
EF-hand calcium binding domain 1.
    
 0.746
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 0.738
cfap53
Cilia and flagella associated protein 53.
   
 0.710
pacrg
PARK2 co-regulated.
    
 
 0.658
tekt3
Tektin 3.
    
 
 0.649
Dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
    
 
 0.643
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.