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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103032852Lamin B receptor. (604 aa)    
Predicted Functional Partners:
W5LGJ6_ASTMX
Cytochrome P450, family 51; Belongs to the cytochrome P450 family.
   
 0.984
Dhcr24
24-dehydrocholesterol reductase.
   
 0.947
sc5d
Sterol-C5-desaturase; Belongs to the sterol desaturase family.
   
 0.924
LOC103022427
Si:ch1073-429i10.1.
  
  
 
0.907
Tm7sf2
Transmembrane 7 superfamily member 2.
  
  
 
0.901
Sqle
Squalene epoxidase a.
   
 
 0.887
sigmar1
Sigma non-opioid intracellular receptor 1.
   
 
 0.876
Hsd17b7
Hydroxysteroid (17-beta) dehydrogenase 7.
   
 
 0.874
LOC103035546
Phosphoethanolamine methyltransferase.
   
 
 0.872
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.857
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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