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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KSL3_ASTMXArrestin, beta 1. (375 aa)    
Predicted Functional Partners:
smo
Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.
    
 0.964
kif3a
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.936
gpr161
G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.
   
 0.934
ENSAMXP00000039227
Cyclin G associated kinase.
    
 0.934
LOC103042940
Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.
    
 0.920
ENSAMXP00000043572
Arrestin, beta 2b.
  
  
0.914
gli2
GLI family zinc finger 2a.
    
 0.910
Gli3
GLI family zinc finger 3.
    
 0.905
Gli1
GLI family zinc finger 1.
    
 0.905
LOC103028990
GLI family zinc finger 2b.
    
  0.904
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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