W5KSW7_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5KSW7_ASTMX

Solute carrier family 38 member 11. (402 aa)

Predicted Functional Partners:

LOC103043211

0.654

lamtor2

0.611

lamtor1

0.581

lamtor5

0.571

lamtor4

0.540

RIMS2

0.526

RIMS2-2

0.526

rragc

0.508

ENSAMXP00000041752

0.508

LOC103027194

0.505

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000041752	LOC103027194	ENSAMXP00000041752	ENSAMXP00000030108	Ras-related GTP binding D.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.686
ENSAMXP00000041752	LOC103043211	ENSAMXP00000041752	ENSAMXP00000043157	Ras-related GTP binding D.	Ras-related GTP binding A.	0.997
ENSAMXP00000041752	W5KSW7_ASTMX	ENSAMXP00000041752	ENSAMXP00000010679	Ras-related GTP binding D.	Solute carrier family 38 member 11.	0.508
ENSAMXP00000041752	lamtor1	ENSAMXP00000041752	ENSAMXP00000032534	Ras-related GTP binding D.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.993
ENSAMXP00000041752	lamtor2	ENSAMXP00000041752	ENSAMXP00000052294	Ras-related GTP binding D.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.994
ENSAMXP00000041752	lamtor4	ENSAMXP00000041752	ENSAMXP00000027581	Ras-related GTP binding D.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.991
ENSAMXP00000041752	lamtor5	ENSAMXP00000041752	ENSAMXP00000029211	Ras-related GTP binding D.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.994
ENSAMXP00000041752	rragc	ENSAMXP00000041752	ENSAMXP00000020918	Ras-related GTP binding D.	Ras-related GTP binding Ca.	0.936
LOC103027194	ENSAMXP00000041752	ENSAMXP00000030108	ENSAMXP00000041752	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Ras-related GTP binding D.	0.686
LOC103027194	LOC103043211	ENSAMXP00000030108	ENSAMXP00000043157	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Ras-related GTP binding A.	0.723
LOC103027194	W5KSW7_ASTMX	ENSAMXP00000030108	ENSAMXP00000010679	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Solute carrier family 38 member 11.	0.505
LOC103027194	lamtor1	ENSAMXP00000030108	ENSAMXP00000032534	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.759
LOC103027194	lamtor2	ENSAMXP00000030108	ENSAMXP00000052294	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.808
LOC103027194	lamtor4	ENSAMXP00000030108	ENSAMXP00000027581	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.644
LOC103027194	lamtor5	ENSAMXP00000030108	ENSAMXP00000029211	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.668
LOC103027194	rragc	ENSAMXP00000030108	ENSAMXP00000020918	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Ras-related GTP binding Ca.	0.686
LOC103043211	ENSAMXP00000041752	ENSAMXP00000043157	ENSAMXP00000041752	Ras-related GTP binding A.	Ras-related GTP binding D.	0.997
LOC103043211	LOC103027194	ENSAMXP00000043157	ENSAMXP00000030108	Ras-related GTP binding A.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.723
LOC103043211	W5KSW7_ASTMX	ENSAMXP00000043157	ENSAMXP00000010679	Ras-related GTP binding A.	Solute carrier family 38 member 11.	0.654
LOC103043211	lamtor1	ENSAMXP00000043157	ENSAMXP00000032534	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.996