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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103029140Spermatogenesis associated 2. (553 aa)    
Predicted Functional Partners:
W5KT96_ASTMX
Cylindromatosis (turban tumor syndrome), like.
     
 0.963
cyld
Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.
     
 0.963
W5LQN4_ASTMX
Uncharacterized protein.
     
 0.956
LOC103040600
Si:dkey-181m9.8.
     
  0.925
rnf31
Uncharacterized protein.
     
  0.925
LOC103042649
Uncharacterized protein.
     
  0.925
rbck1
RanBP-type and C3HC4-type zinc finger containing 1.
     
  0.911
LOC103029459
Sharpin and rbck1 related.
     
  0.910
ENSAMXP00000037490
Si:ch211-189a15.5.
  
  
 
0.908
W5KFM9_ASTMX
SHANK-associated RH domain interacting protein.
     
  0.904
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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