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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ltn1Listerin E3 ubiquitin protein ligase 1. (1767 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
    
 
 0.963
ENSAMXP00000039027
Uncharacterized protein.
    
 
 0.931
Tcf25
Transcription factor 25 (basic helix-loop-helix).
   
 
 0.848
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.830
Trip12
Thyroid hormone receptor interactor 12.
   
 
 0.814
ENSAMXP00000039594
Uncharacterized protein.
   
 
 0.814
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.807
rpl6
Ribosomal protein L6.
    
   0.806
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.756
rpl9
Ribosomal protein L9.
   
   0.753
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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