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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KT96_ASTMXCylindromatosis (turban tumor syndrome), like. (738 aa)    
Predicted Functional Partners:
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.984
Ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.966
LOC103029140
Spermatogenesis associated 2.
     
 0.963
W5LI45_ASTMX
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.958
ddx58
Uncharacterized protein.
    
 0.956
UBB
Ubiquitin B.
   
 0.938
rps27a
Ribosomal protein S27a.
   
 0.933
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.930
LOC103043815
BCL3 transcription coactivator.
   
 0.929
LOC103037118
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 0.924
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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