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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103024546Carnitine palmitoyltransferase 1Cb; Belongs to the carnitine/choline acetyltransferase family. (780 aa)    
Predicted Functional Partners:
ENSAMXP00000037227
Biotin carboxylation domain-containing protein.
     
 0.918
ACSL3
Acyl-CoA synthetase long chain family member 3.
   
 
 0.695
acsl4
Acyl-CoA synthetase long chain family member 4a.
   
 
 0.695
W5KJI5_ASTMX
Acyl-CoA synthetase long chain family member 4b.
   
 
 0.695
LOC103038184
Acyl-CoA synthetase long chain family member 2.
   
 
 0.686
Acsl6
AMP-binding domain-containing protein.
   
 
 0.686
acsl5
Acyl-CoA synthetase long chain family member 5.
   
 
 0.686
LOC103038692
Acyl-CoA synthetase long chain family member 1a.
   
 
 0.686
LOC103043030
Acyl-CoA synthetase long chain family member 1b.
   
 
 0.686
acsbg1
Acyl-CoA synthetase bubblegum family member 1.
     
 0.683
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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