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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp1Ubiquitin carboxyl-terminal hydrolase. (801 aa)    
Predicted Functional Partners:
LOC103039099
WD repeat domain 48b.
   
 0.994
wdr48
WD repeat domain 48a.
   
 0.994
W5L772_ASTMX
FA complementation group D2.
    
 0.981
fanci
FA complementation group I.
   
 0.978
Fancl
FA complementation group L.
     
 0.978
UBB
Ubiquitin B.
    
 0.946
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.942
rps27a
Ribosomal protein S27a.
    
 0.941
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.909
rad18
RAD18 E3 ubiquitin protein ligase.
   
 
 0.837
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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