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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103027967Amino_oxidase domain-containing protein. (608 aa)    
Predicted Functional Partners:
LOC103023667
Lecithin retinol acyltransferase b, tandem duplicate 1.
     
 0.917
LOC103023349
Lecithin retinol acyltransferase b, tandem duplicate 2.
     
 0.917
LOC103023174
Dehydrogenase/reductase (SDR family) member 4.
  
 
 0.913
LOC103044922
Dehydrogenase/reductase (SDR family) member 3a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.913
dhrs3
Dehydrogenase/reductase (SDR family) member 3b.
    
 0.913
W5LFD1_ASTMX
Si:dkey-221h15.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.909
LOC103046429
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.909
LOC103045570
Short chain dehydrogenase/reductase family 16C, member 5b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.909
LOC103044660
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
  
 
 0.907
lrat
Lecithin retinol acyltransferase a.
     
 0.905
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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