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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gscGoosecoid. (236 aa)    
Predicted Functional Partners:
LOC103027102
ISY1 splicing factor homolog.
    
   0.860
rrp15
Ribosomal RNA processing 15 homolog.
    
   0.860
psme3ip1
Family with sequence similarity 192 member A.
    
   0.860
tekt2
Tektin 2 (testicular).
    
   0.860
Fopnl
Fgfr1op N-terminal like.
    
   0.860
znf330
Zinc finger protein 330.
    
   0.860
supt6h
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
    
   0.860
tbx20
T-box transcription factor 20.
    
 
 0.790
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
   0.749
hinfp
Histone H4 transcription factor.
    
   0.749
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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