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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KUT1_ASTMXSelenoprotein N. (548 aa)    
Predicted Functional Partners:
W5L6C2_ASTMX
Selenoprotein K.
      
 0.692
ENSAMXP00000045039
Selenoprotein S.
      
 0.685
W5LPF6_ASTMX
Selenoprotein M.
      
 0.624
W5KFE7_ASTMX
Selenoprotein F.
      
 0.581
txnrd2
Thioredoxin reductase 2, tandem duplicate 2.
      
 0.575
W5KMZ7_ASTMX
Ryanodine receptor 1a (skeletal).
    
 
 0.568
Selenoi
Selenoprotein I; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.536
W5KC04_ASTMX
Uncharacterized protein.
      
 0.535
Msrb1
Methionine sulfoxide reductase B1a.
      
 0.531
eefsec
Eukaryotic elongation factor, selenocysteine-tRNA-specific.
      
 0.529
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.