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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103038661Uncharacterized protein. (624 aa)    
Predicted Functional Partners:
Ankdd1a
Ankyrin repeat and death domain containing 1A.
      
 0.515
sowahd
Sosondowah ankyrin repeat domain family d.
      
 0.515
LOC103047714
Transmembrane protein 119b.
      
 0.515
rassf4
Ras association domain family member 4a.
      
 0.483
W5KQ75_ASTMX
Coiled-coil domain containing 135.
      
 0.408
LOC103046074
Rho GTPase activating protein 45b.
      
 0.408
W5KJB8_ASTMX
RAS p21 protein activator 4.
      
 0.406
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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