LOC103029567 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103029567

Recombination signal binding protein for immunoglobulin kappa J region a. (502 aa)

Predicted Functional Partners:

maml1

0.992

LOC103034623

0.991

LOC103025197

0.991

LOC103042072

0.986

ENSAMXP00000047128

0.977

Ncor2

0.976

snw1

0.973

HDAC2

0.959

LOC103046670

0.959

cir1

0.943

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000047128	LOC103029567	ENSAMXP00000047128	ENSAMXP00000011492	ANK_REP_REGION domain-containing protein.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.977
ENSAMXP00000047128	maml1	ENSAMXP00000047128	ENSAMXP00000035961	ANK_REP_REGION domain-containing protein.	Mastermind-like transcriptional coactivator 1.	0.580
ENSAMXP00000047128	snw1	ENSAMXP00000047128	ENSAMXP00000009394	ANK_REP_REGION domain-containing protein.	SNW domain containing 1.	0.539
HDAC2	LOC103029567	ENSAMXP00000014739	ENSAMXP00000011492	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.959
HDAC2	LOC103046670	ENSAMXP00000014739	ENSAMXP00000044120	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.901
HDAC2	Ncor2	ENSAMXP00000014739	ENSAMXP00000020497	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor corepressor 2.	0.962
HDAC2	cir1	ENSAMXP00000014739	ENSAMXP00000034232	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Corepressor interacting with RBPJ, 1.	0.838
HDAC2	snw1	ENSAMXP00000014739	ENSAMXP00000009394	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	SNW domain containing 1.	0.578
LOC103025197	LOC103029567	ENSAMXP00000051793	ENSAMXP00000011492	Notch receptor 1b.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.991
LOC103025197	maml1	ENSAMXP00000051793	ENSAMXP00000035961	Notch receptor 1b.	Mastermind-like transcriptional coactivator 1.	0.964
LOC103025197	snw1	ENSAMXP00000051793	ENSAMXP00000009394	Notch receptor 1b.	SNW domain containing 1.	0.803
LOC103029567	ENSAMXP00000047128	ENSAMXP00000011492	ENSAMXP00000047128	Recombination signal binding protein for immunoglobulin kappa J region a.	ANK_REP_REGION domain-containing protein.	0.977
LOC103029567	HDAC2	ENSAMXP00000011492	ENSAMXP00000014739	Recombination signal binding protein for immunoglobulin kappa J region a.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.959
LOC103029567	LOC103025197	ENSAMXP00000011492	ENSAMXP00000051793	Recombination signal binding protein for immunoglobulin kappa J region a.	Notch receptor 1b.	0.991
LOC103029567	LOC103034623	ENSAMXP00000011492	ENSAMXP00000015021	Recombination signal binding protein for immunoglobulin kappa J region a.	Notch receptor 1a.	0.991
LOC103029567	LOC103042072	ENSAMXP00000011492	ENSAMXP00000018186	Recombination signal binding protein for immunoglobulin kappa J region a.	Notch receptor 3.	0.986
LOC103029567	LOC103046670	ENSAMXP00000011492	ENSAMXP00000044120	Recombination signal binding protein for immunoglobulin kappa J region a.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.959
LOC103029567	Ncor2	ENSAMXP00000011492	ENSAMXP00000020497	Recombination signal binding protein for immunoglobulin kappa J region a.	Nuclear receptor corepressor 2.	0.976
LOC103029567	cir1	ENSAMXP00000011492	ENSAMXP00000034232	Recombination signal binding protein for immunoglobulin kappa J region a.	Corepressor interacting with RBPJ, 1.	0.943
LOC103029567	maml1	ENSAMXP00000011492	ENSAMXP00000035961	Recombination signal binding protein for immunoglobulin kappa J region a.	Mastermind-like transcriptional coactivator 1.	0.992