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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf113aRing finger protein 113A. (321 aa)    
Predicted Functional Partners:
Cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.993
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.991
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.986
Cwc22
CWC22 spliceosome associated protein homolog.
    
 0.982
prpf19
Pre-mRNA processing factor 19.
    
 
 0.980
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.979
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.965
bud13
BUD13 homolog.
    
 
 0.958
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.957
WDR25
WD repeat domain 25.
    
 0.952
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.