Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
W5KVS9_ASTMXRho GTPase activating protein 20b. (233 aa)    
Predicted Functional Partners:
LOC103031338
Ras homolog family member Cb.
   
 0.489
LOC103021440
Rho family GTPase 3.
   
 0.489
LOC103028705
Ras homolog gene family, member Aa.
   
 0.489
rnd1
Rho family GTPase 1b.
   
 0.489
RHOB
Ras homolog family member B.
   
 0.489
rnd3
Rho family GTPase 3a.
   
 0.489
LOC103029431
Uncharacterized protein.
   
 0.489
ENSAMXP00000040019
Rho family GTPase 3b.
   
 0.489
LOC103035456
Ras homolog family member Ca.
   
 0.489
LOC103027457
Ras homolog gene family, member Ab.
   
 0.489
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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