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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deraDeoxyribose-phosphate aldolase (putative). (318 aa)    
Predicted Functional Partners:
rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.946
taldo1
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
    
 0.946
W5KQS3_ASTMX
Thymidine phosphorylase.
 
 0.938
LOC103035977
Transketolase a.
  
 0.937
W5L147_ASTMX
Transketolase b.
  
 0.937
TKT
Transketolase.
  
 0.937
LOC103034172
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
     
 0.906
aldoa
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
     
 0.906
LOC103030129
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
     
 0.906
aldoc
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
     
 0.906
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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