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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KW01_ASTMXLow density lipoprotein receptor-related protein 8, apolipoprotein e receptor. (876 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.841
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.804
dab1
DAB adaptor protein 1a.
    
 0.759
Ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.720
ENSAMXP00000042222
Heparan sulfate proteoglycan 2.
    
0.602
Agrn
Agrin.
    
 0.602
W5KJM9_ASTMX
Uncharacterized protein.
    
 0.583
ENSAMXP00000031362
Uncharacterized protein.
    
 0.583
ENSAMXP00000037400
Uncharacterized protein.
    
 0.583
ENSAMXP00000041639
SH3 domain-containing protein.
    
 0.583
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.