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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narfNuclear prelamin A recognition factor; Belongs to the NARF family. (465 aa)    
Predicted Functional Partners:
ciao1
Probable cytosolic iron-sulfur protein assembly protein CIAO1; Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Belongs to the WD repeat CIA1 family.
    
 0.867
ciao2b
Cytosolic iron-sulfur assembly component 2B.
    
 0.856
ciao2a
Cytosolic iron-sulfur assembly component 2A.
    
 0.791
Mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
    
 0.781
ENSAMXP00000033353
Nucleotide binding protein 2 (MinD homolog, E. coli).
   
 0.714
nubp1
Cytosolic Fe-S cluster assembly factor NUBP1; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP1/NBP35 subfamily.
   
 0.714
W5KVQ8_ASTMX
2Fe-2S ferredoxin-type domain-containing protein.
    
 
 0.661
LOC103037318
2Fe-2S ferredoxin-type domain-containing protein.
    
 
 0.661
LOC111194933
2Fe-2S ferredoxin-type domain-containing protein.
    
 
 0.661
fdx2
Ferredoxin 2.
    
 
 0.661
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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