bicdl1 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bicdl1

BICD family like cargo adaptor 1. (604 aa)

Predicted Functional Partners:

LOC103036907

0.909

DCTN6

0.871

dctn5

0.871

Actr10

0.869

dctn4

0.867

capzb

0.863

dctn2

0.855

dync1li2

0.665

W5KDS6_ASTMX

0.665

W5LBS2_ASTMX

0.649

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Actr10	DCTN6	ENSAMXP00000021098	ENSAMXP00000038461	Actin related protein 10; Belongs to the actin family.	Dynactin subunit 6.	0.996
Actr10	LOC103036907	ENSAMXP00000021098	ENSAMXP00000034449	Actin related protein 10; Belongs to the actin family.	Actin related protein 1, centractin.	0.976
Actr10	W5KDS6_ASTMX	ENSAMXP00000021098	ENSAMXP00000005737	Actin related protein 10; Belongs to the actin family.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.847
Actr10	W5LBS2_ASTMX	ENSAMXP00000021098	ENSAMXP00000017284	Actin related protein 10; Belongs to the actin family.	Dynactin 3 (p22).	0.972
Actr10	bicdl1	ENSAMXP00000021098	ENSAMXP00000012122	Actin related protein 10; Belongs to the actin family.	BICD family like cargo adaptor 1.	0.869
Actr10	capzb	ENSAMXP00000021098	ENSAMXP00000053864	Actin related protein 10; Belongs to the actin family.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.961
Actr10	dctn2	ENSAMXP00000021098	ENSAMXP00000040494	Actin related protein 10; Belongs to the actin family.	Dynactin 2 (p50).	0.996
Actr10	dctn4	ENSAMXP00000021098	ENSAMXP00000021259	Actin related protein 10; Belongs to the actin family.	Dynactin 4.	0.996
Actr10	dctn5	ENSAMXP00000021098	ENSAMXP00000042708	Actin related protein 10; Belongs to the actin family.	Dynactin 5.	0.987
Actr10	dync1li2	ENSAMXP00000021098	ENSAMXP00000003016	Actin related protein 10; Belongs to the actin family.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.847
DCTN6	Actr10	ENSAMXP00000038461	ENSAMXP00000021098	Dynactin subunit 6.	Actin related protein 10; Belongs to the actin family.	0.996
DCTN6	LOC103036907	ENSAMXP00000038461	ENSAMXP00000034449	Dynactin subunit 6.	Actin related protein 1, centractin.	0.973
DCTN6	W5KDS6_ASTMX	ENSAMXP00000038461	ENSAMXP00000005737	Dynactin subunit 6.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.902
DCTN6	W5LBS2_ASTMX	ENSAMXP00000038461	ENSAMXP00000017284	Dynactin subunit 6.	Dynactin 3 (p22).	0.987
DCTN6	bicdl1	ENSAMXP00000038461	ENSAMXP00000012122	Dynactin subunit 6.	BICD family like cargo adaptor 1.	0.871
DCTN6	capzb	ENSAMXP00000038461	ENSAMXP00000053864	Dynactin subunit 6.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.964
DCTN6	dctn2	ENSAMXP00000038461	ENSAMXP00000040494	Dynactin subunit 6.	Dynactin 2 (p50).	0.990
DCTN6	dctn4	ENSAMXP00000038461	ENSAMXP00000021259	Dynactin subunit 6.	Dynactin 4.	0.999
DCTN6	dctn5	ENSAMXP00000038461	ENSAMXP00000042708	Dynactin subunit 6.	Dynactin 5.	0.998
DCTN6	dync1li2	ENSAMXP00000038461	ENSAMXP00000003016	Dynactin subunit 6.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.902