ssna1 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssna1

Sjogren syndrome nuclear autoantigen 1. (113 aa)

Predicted Functional Partners:

Nup43

0.564

psmc5

0.559

haus1

0.553

lrguk

0.509

psmd10

0.490

haus7

0.482

abcf3

0.457

rbm42

0.432

ENSAMXP00000048864

0.431

TPPP

0.424

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000048864	ssna1	ENSAMXP00000048864	ENSAMXP00000012165	Uncharacterized protein.	Sjogren syndrome nuclear autoantigen 1.	0.431
Nup43	psmd10	ENSAMXP00000035047	ENSAMXP00000043212	Nucleoporin 43.	Proteasome 26S subunit, non-ATPase 10.	0.430
Nup43	ssna1	ENSAMXP00000035047	ENSAMXP00000012165	Nucleoporin 43.	Sjogren syndrome nuclear autoantigen 1.	0.564
TPPP	ssna1	ENSAMXP00000020794	ENSAMXP00000012165	Tubulin polymerization promoting protein.	Sjogren syndrome nuclear autoantigen 1.	0.424
abcf3	lrguk	ENSAMXP00000009187	ENSAMXP00000032719	ATP-binding cassette, sub-family F (GCN20), member 3.	Leucine-rich repeats and guanylate kinase domain containing.	0.494
abcf3	ssna1	ENSAMXP00000009187	ENSAMXP00000012165	ATP-binding cassette, sub-family F (GCN20), member 3.	Sjogren syndrome nuclear autoantigen 1.	0.457
haus1	haus7	ENSAMXP00000038684	ENSAMXP00000029927	HAUS augmin-like complex, subunit 1.	HAUS augmin-like complex, subunit 7.	0.976
haus1	rbm42	ENSAMXP00000038684	ENSAMXP00000036260	HAUS augmin-like complex, subunit 1.	RNA binding motif protein 42.	0.955
haus1	ssna1	ENSAMXP00000038684	ENSAMXP00000012165	HAUS augmin-like complex, subunit 1.	Sjogren syndrome nuclear autoantigen 1.	0.553
haus7	haus1	ENSAMXP00000029927	ENSAMXP00000038684	HAUS augmin-like complex, subunit 7.	HAUS augmin-like complex, subunit 1.	0.976
haus7	rbm42	ENSAMXP00000029927	ENSAMXP00000036260	HAUS augmin-like complex, subunit 7.	RNA binding motif protein 42.	0.930
haus7	ssna1	ENSAMXP00000029927	ENSAMXP00000012165	HAUS augmin-like complex, subunit 7.	Sjogren syndrome nuclear autoantigen 1.	0.482
lrguk	abcf3	ENSAMXP00000032719	ENSAMXP00000009187	Leucine-rich repeats and guanylate kinase domain containing.	ATP-binding cassette, sub-family F (GCN20), member 3.	0.494
lrguk	ssna1	ENSAMXP00000032719	ENSAMXP00000012165	Leucine-rich repeats and guanylate kinase domain containing.	Sjogren syndrome nuclear autoantigen 1.	0.509
psmc5	psmd10	ENSAMXP00000029095	ENSAMXP00000043212	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 10.	0.994
psmc5	ssna1	ENSAMXP00000029095	ENSAMXP00000012165	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Sjogren syndrome nuclear autoantigen 1.	0.559
psmd10	Nup43	ENSAMXP00000043212	ENSAMXP00000035047	Proteasome 26S subunit, non-ATPase 10.	Nucleoporin 43.	0.430
psmd10	psmc5	ENSAMXP00000043212	ENSAMXP00000029095	Proteasome 26S subunit, non-ATPase 10.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.994
psmd10	ssna1	ENSAMXP00000043212	ENSAMXP00000012165	Proteasome 26S subunit, non-ATPase 10.	Sjogren syndrome nuclear autoantigen 1.	0.490
rbm42	haus1	ENSAMXP00000036260	ENSAMXP00000038684	RNA binding motif protein 42.	HAUS augmin-like complex, subunit 1.	0.955