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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cdc42se2CDC42 small effector 2. (58 aa)    
Predicted Functional Partners:
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
  
 0.784
Hsp90b1
Heat shock protein 90, beta (grp94), member 1.
  
 0.702
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.594
W5LKS2_ASTMX
Uncharacterized protein.
   
 0.586
LOC103034468
Cell division cycle 42.
   
 0.586
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
  
 0.580
LOC103039823
NME/NM23 family member 8; Belongs to the NDK family.
  
 0.578
W5KMM6_ASTMX
TSC complex subunit 1b.
  
 0.576
tsc1
TSC complex subunit 1a.
  
 0.576
trap1
TNF receptor-associated protein 1.
  
 0.576
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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