Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5KXG7_ASTMXCoiled-coil domain containing 47. (416 aa)    
Predicted Functional Partners:
ncln
Nicalin.
    
 
 0.944
wdr83os
WD repeat domain 83 opposite strand.
    
 
 0.915
tmem147
Transmembrane protein 147.
   
 
 0.890
ENSAMXP00000032417
Uncharacterized protein.
   
 
 0.890
LOC103034532
Zgc:113278.
    
 
 0.886
Sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.886
emc2
ER membrane protein complex subunit 2.
   
 
 0.880
LOC103036990
SEC61 translocon alpha 1 subunit, like.
   
 
 0.858
LOC103023094
SEC61 translocon alpha 1 subunit.
   
 
 0.858
rpl8
Ribosomal protein L8.
   
 
 0.851
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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