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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jmjd1cJumonji domain containing 1Cb. (2333 aa)    
Predicted Functional Partners:
kdm2b
Lysine (K)-specific demethylase 2Ba.
   
 
 0.455
LOC103024695
Lysine (K)-specific demethylase 2Aa.
   
 
 0.455
kdm2a
Lysine (K)-specific demethylase 2Ab.
   
 
 0.455
ENSAMXP00000045208
Lysine (K)-specific demethylase 2Bb.
   
 
 0.455
fbxl19
Zgc:158376.
   
 
 0.451
kdm1a
Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.
     
 0.418
ENSAMXP00000028914
Histone H3; Belongs to the histone H3 family.
    
 0.410
LOC103028202
Histone H3; Belongs to the histone H3 family.
    
 0.410
ENSAMXP00000040584
Histone H3; Belongs to the histone H3 family.
    
 0.410
ENSAMXP00000045875
Histone H3; Belongs to the histone H3 family.
    
 0.410
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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