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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KXQ3_ASTMXATP-binding cassette, sub-family A (ABC1), member 2. (2208 aa)    
Predicted Functional Partners:
W5KFT4_ASTMX
Nuclear receptor subfamily 1, group H, member 3.
    
 0.674
ENSAMXP00000035084
Uncharacterized protein.
   
 0.594
ENSAMXP00000035399
Uncharacterized protein.
   
 0.594
LOC103043413
Nuclear receptor subfamily 1, group H, member 5.
    
 0.470
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.470
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
      
 0.459
LOC103027427
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.449
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.448
LOC103025033
Apolipoprotein A-Ia.
     
 0.427
LOC103036553
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
 
  0.422
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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