Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103039003Family with sequence similarity 49 member Ba. (325 aa)    
Predicted Functional Partners:
LOC103034053
Rac family small GTPase 1a.
    
 0.936
LOC111192386
Rac family small GTPase 3b.
    
 0.898
rac3
Rac family small GTPase 3a.
    
 0.898
ENSAMXP00000041200
Uncharacterized protein.
    
 0.774
LOC111193007
Rac family small GTPase 2.
    
 0.774
ENSAMXP00000051243
Uncharacterized protein.
    
 0.774
ENSAMXP00000054504
Ras homolog family member G.
    
 0.774
lrrc40
Leucine rich repeat containing 40.
     
 0.630
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
      
 0.620
klhl7
Kelch-like family member 7.
      
 0.537
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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