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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103025551Uncharacterized protein; Belongs to the semaphorin family. (884 aa)    
Predicted Functional Partners:
W5K3K3_ASTMX
MET proto-oncogene, receptor tyrosine kinase.
    
 0.646
mst1r
Macrophage stimulating 1 receptor b.
    
 0.646
W5LTS7_ASTMX
Macrophage stimulating 1 receptor a.
    
 0.646
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.607
ca6
Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.
      
 0.577
W5LAK5_ASTMX
Plexin b1b.
    
0.475
Plxnb3
Plexin B3.
    
0.475
W5LCZ4_ASTMX
Plexin b1a.
    
0.475
Plxnb2
Plexin b2a.
    
0.475
W5K1E9_ASTMX
Plexin A2.
    
0.459
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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