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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103030938BUB1 mitotic checkpoint serine/threonine kinase Ba. (642 aa)    
Predicted Functional Partners:
bub1
BUB1 mitotic checkpoint serine/threonine kinase.
   
0.989
W5LET4_ASTMX
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.988
cdc20
Cell division cycle 20 homolog.
   
 0.987
nek2
NIMA-related kinase 2.
   
 0.987
bub3
BUB3 mitotic checkpoint protein.
   
 0.975
ndc80
NDC80 kinetochore complex component.
   
 0.971
cdc23
CDC23 (cell division cycle 23, yeast, homolog).
   
 0.965
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 0.963
nuf2
UF2 component of NDC80 kinetochore complex.
   
 0.962
knl1
Kinetochore scaffold 1.
   
 0.960
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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